Volume 12, Number 4—April 2006
Research
Lineage 1 and 2 Strains of Encephalitic West Nile Virus, Central Europe
Table
West Nile virus strains included in the phylogenetic analysis
Name | Code | Accession no. | Isolation |
|||
---|---|---|---|---|---|---|
Year | Host | Origin | Lineage, clade | |||
WNV HNY1999 | NY99a | AF202541 | 1999 | Human | New York, USA | 1a |
WNV NY99flamingo38299 | NY99b | AF196835 | 1999 | Flamingo | New York, USA | 1a |
WNV IS98STD | Is98 | AF481864 | 1998 | Stork | Israel | 1a |
WNV goose-Hungary/03 | Hu03 | DQ118127 | 2003 | Goose | Hungary | 1a |
WNV Italy1998Equine | It98 | AF404757 | 1998 | Horse | Italy | 1a |
WNV RO9750 | Ro96 | AF260969 | 1996 | Culex pipiens | Romania | 1a |
WNV VLG4 | Rus99a | AF317203 | 1999 | Human | Volgograd, Russia | 1a |
WNV LEIV-Vlg99-27889 | Rus99b | AY277252 | 1999 | Human | Volgograd, Russia | 1a |
WNV PaH001 | Tu97 | AY268133 | 1997 | Human | Tunisia | 1a |
WNV PaAn001 | Fr00 | AY268132 | 2000 | Horse | France | 1a |
WNV Eg 101 | Eg51 | AF260968 | 1951 | Human | Egypt | 1a |
WNV Chin-01 | Chin01 | AY490240 | 1950s | ? | Russia | 1a |
WNV Kunjin MRM61C | Kunjin | D00246 | 1960 | Cx. annulirostris | Australia | 1b |
WNV Sarafend | Sarafend | AY688948 | Laboratory strain | 2 | ||
WNV B956 (WNFCG) | Ug37 | NC_001563 | 1937 | Human | Uganda | 2 |
WNV goshawk-Hungary/04 | Hu04 | DQ116961 | 2004 | Goshawk | Hungary | 2 |
Rabensburg virus (97-103) | RabV | AY765264 | 1997 | Cx. pipiens | Czech R. | 3? |
WNV LEIV-Krnd88-190 | Rus98 | AY277251 | 1998 | Dermacentor marginatus | Caucasus, Russia (Georgia?) | 4? |