Volume 12, Number 9—September 2006
Research
Genomic Signatures of Human versus Avian Influenza A Viruses
Guang-Wu Chen*1, Shih-Cheng Chang*1, Chee-Keng Mok*, Yu-Luan Lo*, Yu-Nong Kung*, Ji-Hung Huang*, Yun-Han Shih*, Ji-Yi Wang*, Chiayn Chiang*, Chi-Jene Chen*, and Shin-Ru Shih*
Table A1
Listing of 401 genomes used in this study. All accessions are according to GenBank, except for A/Puerto Rico/8/34(H1N1), which are from Influenza Sequence Database (ISD). Full table available at www.cdc.gov/eid-static/spreadsheets/06-0276-TA1.xlsx.
| Strain | Subtype | Host | PB2 | PB1 | PA | HA | NP | NA | M | NS |
|---|---|---|---|---|---|---|---|---|---|---|
| A/BAR-HEADED GOOSE/QINGHAI/5/05 | H5N1 | Avian | DQ095757 | DQ095737 | DQ095717 | DQ095617 | DQ095677 | DQ095657 | DQ095637 | DQ095697 |
| A/BAR-HEADED GOOSE/QINGHAI/59/05 | H5N1 | Avian | DQ095752 | DQ095732 | DQ095712 | DQ095612 | DQ095672 | DQ095652 | DQ095632 | DQ095692 |
| A/BAR-HEADED GOOSE/QINGHAI/60/05 | H5N1 | Avian | DQ095755 | DQ095735 | DQ095715 | DQ095615 | DQ095675 | DQ095655 | DQ095635 | DQ095695 |
| A/BAR-HEADED GOOSE/QINGHAI/61/05 | H5N1 | Avian | DQ095758 | DQ095738 | DQ095718 | DQ095618 | DQ095678 | DQ095658 | DQ095638 | DQ095698 |
| A/BAR-HEADED GOOSE/QINGHAI/62/05 | H5N1 | Avian | DQ095760 | DQ095740 | DQ095720 | DQ095620 | DQ095680 | DQ095660 | DQ095640 | DQ095700 |
| A/BAR-HEADED GOOSE/QINGHAI/65/05 | H5N1 | Avian | DQ095762 | DQ095742 | DQ095722 | DQ095622 | DQ095682 | DQ095662 | DQ095642 | DQ095702 |
| A/BAR-HEADED GOOSE/QINGHAI/67/05 | H5N1 | Avian | DQ095763 | DQ095743 | DQ095723 | DQ095623 | DQ095683 | DQ095663 | DQ095643 | DQ095703 |
| A/BAR-HEADED GOOSE/QINGHAI/68/05 | H5N1 | Avian | DQ095753 | DQ095733 | DQ095713 | DQ095613 | DQ095673 | DQ095653 | DQ095633 | DQ095693 |
| A/BAR-HEADED GOOSE/QINGHAI/75/05 | H5N1 | Avian | DQ095759 | DQ095739 | DQ095719 | DQ095619 | DQ095679 | DQ095659 | DQ095639 | DQ095699 |
| A/BIRD/THAILAND/3.1/2004 | H5N1 | Avian | AY651715 | AY651661 | AY651607 | AY651330 | AY651495 | AY651441 | AY651384 | AY651550 |
| A/BROWN-HEADED GULL/QINGHAI/3/05 | H5N1 | Avian | DQ095756 | DQ095736 | DQ095716 | DQ095616 | DQ095676 | DQ095656 | DQ095636 | DQ095696 |
| A/CHICKEN/BEIJING/1/94 | H9N2 | Avian | AF156438 | AF156423 | AF156452 | AF156380 | AF156409 | AF156398 | AF156466 | AF156480 |
| A/CHICKEN/BEIJING/8/98 | H9N2 | Avian | AF508649 | AF508627 | AF508671 | AF508562 | AF508605 | AF508583 | AF508693 | AF508714 |
| A/CHICKEN/BRITISH COLUMBIA/04 | H7N3 | Avian | AY616766 | AY616765 | AY616764 | AY611524 | AY611527 | AY611526 | AY611525 | AY611528 |
| A/CHICKEN/CALIFORNIA/139/01 | H6N2 | Avian | AF457705 | AF457706 | AF457707 | AF457713 | AF474070 | AF457711 | AF457712 | AF457708 |
| A/CHICKEN/CALIFORNIA/431/00 | H6N2 | Avian | AF457697 | AF457698 | AF457699 | AF457704 | AF457701 | AF457702 | AF457703 | AF457700 |
| A/CHICKEN/CALIFORNIA/465/00 | H6N2 | Avian | AF457689 | AF457690 | AF457691 | AF457696 | AF457693 | AF457694 | AF457695 | AF457692 |
| A/CHICKEN/CALIFORNIA/6643/01 | H6N2 | Avian | AF457681 | AF457682 | AF457683 | AF457688 | AF457685 | AF457686 | AF457687 | AF457684 |
| A/CHICKEN/CALIFORNIA/905/01 | H6N2 | Avian | AF457672 | AF457673 | AF457674 | AF457679 | AF457676 | AF457677 | AF457678 | AF457675 |
| A/CHICKEN/GERMANY/R28/03 | H7N7 | Avian | AJ620347 | AJ620348 | AJ619677 | AJ620350 | AJ620352 | AJ620349 | AJ619676 | AJ619678 |
| A/CHICKEN/GUANGDONG/10/00 | H9N2 | Avian | AF508650 | AF508628 | AF508672 | AF508563 | AF508606 | AF508584 | AF508694 | AF508715 |
| A/CHICKEN/GUANGDONG/11/97 | H9N2 | Avian | AF508651 | AF508629 | AF508673 | AF508564 | AF508607 | AF508585 | AF508695 | AF508716 |
| A/CHICKEN/GUANGDONG/174/04 | H5N1 | Avian | AY609309 | AY609310 | AY609311 | AY609312 | AY609313 | AY609314 | AY609315 | AY609316 |
| A/CHICKEN/GUANGDONG/178/04 | H5N1 | Avian | AY737293 | AY737294 | AY737295 | AY737296 | AY737297 | AY737299 | AY737298 | AY737300 |
| A/CHICKEN/GUANGDONG/191/04 | H5N1 | Avian | AY737286 | AY737287 | AY737288 | AY737289 | AY737290 | AY737291 | AY737292 | AY737285 |
| A/CHICKEN/HONG KONG/220/97 | H5N1 | Avian | AF046086 | AF046085 | AF046087 | AF046080 | AF046084 | AF046081 | AF046082 | AF046083 |
| A/CHICKEN/HONG KONG/728/97 | H5N1 | Avian | AF098579 | AF098592 | AF098606 | AF046099 | AF098618 | AF098548 | AF098562 | AF098571 |
| A/CHICKEN/HONG KONG/739/94 | H9N2 | Avian | AF156436 | AF156422 | AF156450 | AF156379 | AF156408 | AF156397 | AF156464 | AF156478 |
| A/CHICKEN/HONG KONG/FY150/01 | H5N1 | Avian | AY221587 | AY221578 | AY221569 | AY221524 | AF509120 | AF509095 | AF509043 | AY221560 |
| A/CHICKEN/HONG KONG/NT873.3/01 | H5N1 | Avian | AY221585 | AY221576 | AY221567 | AY221522 | AY221549 | AY221540 | AY221531 | AY221558 |
| A/CHICKEN/HONG KONG/YU562/01 | H5N1 | Avian | AY221592 | AY221583 | AY221574 | AY221529 | AF509118 | AY221547 | AF509041 | AF509067 |
| A/CHICKEN/HONG KONG/YU822.2/01 | H5N1 | Avian | AY221591 | AY221582 | AY221573 | AY221528 | AY221555 | AY221546 | AY221537 | AY221564 |
1These authors contributed equally to this article.
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