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Volume 15, Number 1—January 2009

Hepatitis E Virus Genotype 3 Diversity, France

Florence Legrand-Abravanel, Jean-Michel Mansuy, Martine Dubois, Nassim Kamar, Jean-Marie Peron, Lionel Rostaing, and Jacques IzopetComments to Author 
Author affiliations: Institut National de la Santé et de la Recherche Médicale, Toulouse, France (F. Legrand-Abravanel, M. Dubois, L. Rostaing, J. Izopet); Centre Hospitalier Universitaire, Toulouse (F. Legrand-Abravanel, J.-M. Mansuy, M. Dubois, N. Kamar, J.-M. Peron, L. Rostaing, J. Izopet)

Main Article

Table 2

Nucleotide sequence identity between TLS25 (hepatitis virus E genotype 3f) and available full-length genomes

GenBank accession no. Country Origin Genotype Sequence homology, %
M73218 Burma Human 1a 72.7
D10330 Burma Human 1a 72.8
AF051830 Nepal Human 1a 72.7
AF076239 India Human 1a 72.3
X99441 India Human 1a 72.6
AF459438 India Human 1a 72.5
AF185822 Pakistan Human 1a 72.3
L08816 China Human 1b 72.5
M94177 China Human 1b 72.7
L25595 China Human 1b 72.7
D11093 China Human 1b 72.5
D11092 China Human 1b 72.8
X98292 China Human 1b 73.0
AY230202 Morocco Human 1d 72.9
AY204877 Chad Human 1e 72.1
M74506 Mexico Human 2a 72.0
AB200239 Japan Human 4c 74.2
AB099347 Japan Human 4c 74.2
AB097811 Japan Swine 4c 74.3
AB097812 Japan Human 4c 74.2
AB080575 Japan Human 4c 73.6
AB074915 Japan Human 4c 74.5
AB074917 Japan Human 4c 74.4
AB161717 Japan Human 4c 74.1
AB161718 Japan Human 4c 74.1
AB108537 China Human 4g 74.4
AJ272108 China Human 4e 73.7
AY594199 China Swine 4d 74.1
AF455784 Kirgizstan Swine 3g 81.8
AB074918 Japan Human 3a 80.4
AB074920 Japan Human 3a 80.1
AB089824 Japan Human 3a 80.6
AF082843 USA Swine 3a 80.5
AF060668 USA Human 3a 79.5
AB189070 Japan Boar 3b 80.1
AB189071 Japan Deer 3b 79.9
AB189072 Japan human 3b 79.7
AP003430 Japan human 3b 80.1
AB073912 Japan Swine 3b 80.2
AB091394 Japan Human 3b 80.3
AY115488 Canada Swine 3j 80.2
AB248522 Japan Swine 3e 84.2
AB248521 Japan Swine 3e 83.1
AB248520 Japan Human 3e 84.3
AB290312 Mongolia Swine 3 79.7

Main Article

Page created: November 19, 2010
Page updated: November 19, 2010
Page reviewed: November 19, 2010
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