Volume 17, Number 5—May 2011
Dispatch
Phylogenetic Analysis of West Nile Virus Isolates, Italy, 2008–2009
Table A1
Comparison of amino acid substitutions of West Nile virus strains isolated in Italy, 2008–2009, to different European and Mediterranean West Nile virus strains and to reference strain EG101*
AA position in WNV polyprotein | AA position in WNV protein | TOS‐09 | NAL‐09 | CHI‐09 | BAL‐09 | FAN‐09 | MAN‐08 | Italy 15803/08 (FJ483548) | Italy 15217/08 (FJ483549) | Italy‐09 (GU011992) | Italy/98 (AF404757) | Morocco/03 (AY701413) | France 405/04 (DQ786572) | Spain GE2o/V (FJ766332) | Portugal/04 (AJ965626) | EG101 (AF260968) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
341 | E‐51 | A | A | A | A | A | A | A | A | A | A | A | A | T | A | A |
378 | E‐88 | P | P | P | P | P | P | P | P | P | P | P | P | S | P | P |
443 | E‐153 | G | G | G | G | G | G | G | G | G | G | G | R | G | G | G |
602 | E‐312 | L | L | L | L | L | L | L | L | L | L | F | L | L | L | L |
1754 | NS3‐249 | T | T | T | P | P | P | P | P | P | T | T | T | P | P | P |
2209 | NS4a‐85 | I | I | I | I | I | I | I | I | I | V | V | V | V | V | V |
2224 | NS4a‐100 | S | S | S | S | S | S | S | S | S | P | P | P | P | P | P |
2265 | NS4a‐141 | M | M | M | L | M | M | M | M | M | M | M | M | M | M | L |
2359 | NS4b‐86 | F | I | F | F | F | F | F | F | F | F | F | F | F | F | F |
2516 | NS4b‐243 | I | I | I | T | T | T | T | T | T | T | T | T | T | T | T |
2786 | NS5‐258 | A | A | A | A | A | A | A | A | A | V | V | V | V | V | V |
2920 | NS5‐292 | P | P | P | P | S | S | S | S | S | S | S | S | S | S | R |
2950 | NS5‐422 | K | K | K | K | K | K | K | K | K | R | R | R | R | R | R |
3169 | NS5‐641 | T | T | T | T | A | A | T | T | T | T | T | T | T | T | T |
3407 | NS5‐879 | I | I | I | H | I | I | I | I | I | I | I | I | I | I | I |
*The amino acid position numbers refer to the EG101 strain. GenBank accession numbers are shown in parentheses. WNV, West Nile virus; E, envelope; NS, nonstructural.
1These authors contributed equally to this article.