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Volume 21, Number 2—February 2015
Dispatch

Comparative Analysis of African Swine Fever Virus Genotypes and Serogroups

Alexander Malogolovkin1Comments to Author , Galina Burmakina1, Ilya Titov, Alexey Sereda, Andrey Gogin, Elena Baryshnikova, and Denis Kolbasov
Author affiliations: National Research Institute for Veterinary Virology and Microbiology, Russian Academy of Agriculture Science, Pokrov, Russia

Main Article

Table

ASFV isolates selected for inclusion in a study comparing ASFV genotypes and serogroups*

Isolate Country of origin† Year
 p72 genotype GenBank
accession no. Serogroup
Isolated from primary outbreak Isolate deposited‡ Attenuated variant deposited‡
L57 Portugal 1957 1982 – I AF301537.1 1
L50 Portugal NK 1983 – I AF301537.1 1
LC-PP Portugal – 1967 1967 I AF301537.1 1
Katanga Zaire (DRC) NK 1978 – I KJ526355 1
Katanga/105 Zaire (DRC) NK 1978 – I KJ671546 1
STP-1 Sao-Tome and Principe 1979 1979 – I KJ526371 4
P-60 Portugal NK 1978 – I AF301539 4
F-32 France 1964 1969 – I KJ671547 4
FK-32/135 France – 1973 1973 I KJ526370 4
О-77 USSR (Ukraine) 1977 1977 – I KJ671544 4
Brasil-80 Brazil 1979 1980 – I KJ526367 4
691/88 Switzerland NK 1989 – I KJ671549 4
PPА Spain NK 1984 – I KJ526362 4
КК262 Zaire (DRC) – 1989 1992 I KJ526364 2
КК202 Zaire (DRC) – 1974 1974 I KJ526363 2
К49 Zaire (DRC) 1949 1983 – I KJ671543 2
Ndjassi-77 Zaire (DRC) 1977 1979 – I KM236553 2
Sylva 1 Angola 1982 1982 – I KJ526365 2
Mfuati-79 Congo (People’s Republic of Congo) 1979 1980 – I KJ526368 2
Congo-73 Zaire (DRC) NK 1983 – I KJ671545 2
М78 Mozambique NK 1978 – V KJ671548 3
МК200 Mozambique – 1980 1980 V KJ526369 3
Stavropol 01/08 Russia 2008 2009 – II JQ771686 8
TSP 80 Tanzania NK 1967 – X KJ526361 5
TSP80/300 Tanzania – 1986 1986 X KJ526366 5
Bartlett Kenya NK 1961 – X§ KJ526356 ND
Uganda Uganda NK 1984 – X KJ526359 7
Magadi Kenya NK 1984 – X§ KJ526358 ND
Davis Кenya NK 1986 – X§ KJ526357 ND
TS-7 Tanzania NK 1967 – X KJ526360 6
Rhodesia Rhodesia (Zimbabwe) NK 1986 – VIII KJ671542 8
Spenser Republic of South Africa NK 1985 – ?¶ KJ526354 2

*The isolates were selected from the African swine fever virus (ASFV) collection at the National Research Institute for Veterinary Virology and Microbiology (VNIIVViM) in Рokrov, Russia. ASFV genotypes are assigned according to p72 (B646L) nucleotide sequencing and phylogenetic tree reconstruction. Serogroups are defined on the basis of results of hemadsorption inhibition assay (HAI) with reference serum (serogroups 1–8). ASFV isolates from primary outbreaks as well as attenuated variants have been characterized. Democratic Republic of Congo; –, not applicable; NK, not known; ND, not defined.
†If a country name changed since the virus was isolated, the current name of the country is shown in parentheses.
‡Deposited into the collection at VNIIVViM.
§Isolates Bartlett, Magadi, and Davis could not be placed into an existing serogroup because no HAI was observed with available reference serum, so exact serogroups for these isolates are not defined.
¶Isolate Spenser does not belong to any of the 22 known genotypes and remains untyped.

Main Article

1These authors contributed equally to this article.

Page created: January 21, 2015
Page updated: January 21, 2015
Page reviewed: January 21, 2015
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
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