Volume 22, Number 5—May 2016
Research
Plasmodium falciparum K76T pfcrt Gene Mutations and Parasite Population Structure, Haiti, 2006–2009
Table 2
Monogenic barcoding data of Plasmodium falciparum samples determined to assess genetic relatedness, Haiti, 2006 and 2007
Sample | Location | Year | Molecular barcode* | Type | Category |
---|---|---|---|---|---|
15 | Deschappelles | 2006 | TACTGCGGATTACCACCAAACTTG | A | Identical |
35 |
Les Cayes |
2007 |
TACTGCGGATTACCACCAAACTTG |
Identical |
|
22 | Jeremie | 2007 | CACTCCGGATCXTCAACAAACTTG | B | Identical |
23 |
Jeremie |
2007 |
CACTCCGGATCXTCAACAAACTTG |
Identical |
|
31 | Les Cayes | 2007 | TACTGGGGACTACACCCTAGCTTG | C | Identical |
33 |
Les Cayes |
2007 |
TACTGGGGACTACACCCTAGCTTG |
Identical |
|
38 | Les Cayes | 2007 | TACTCCGGATCGTCCACAAGCTTG | D | Identical |
44 | Les Cayes | 2007 | TACTCCGGATCGTCCACAAGCTTG | Identical | |
27 |
Les Cayes |
2007 |
TACTCCGGATTXTCCACAAGCTTG |
Related |
|
6 | Miragoane | 2006 | TACTCCAGACTXCCAACTCGATTG | E | Related |
36 |
Les Cayes |
2007 |
TACTCCAGACTACCAACTCGATTG |
Related |
|
11 | Deschappelles | 2006 | TATCCCGGATTACCACCTAACCTG | F | Related |
16 |
Deschappelles |
2007 |
TATCCCGGATTAXCCCCTAACCTG |
Related |
|
30 | Les Cayes | 2007 | TACTGCGGATXACACACTAGCCTG | G | Related |
43 |
Les Cayes |
2007 |
TACTGCGGATTXCACACAAGCCTX |
Related |
|
5 | Miragoane | 2006 | XACTCCGGACTXCAACCAAACTTG | U | Unique |
7 | Miragoane | 2006 | TACTCCAGACTACCAACTCGACGG | U | Unique |
8 | Deschappelles | 2006 | TATTGCGGATTXCCCCCTAACTTG | U | Unique |
9 | Deschappelles | 2006 | CACTCCGGATTACACACAAACCTG | U | Unique |
10 | Deschappelles | 2006 | TATCCCGGATCATACCCTAACTTG | U | Unique |
12 | Deschappelles | 2006 | TACTGCAGATXXCACACTAAACTG | U | Unique |
13 | Deschappelles | 2006 | TATTGCAGATCGTCCCCTAGATTG | U | Unique |
14 | Deschappelles | 2006 | TACTCCAGATTGTCCCCTAGCTTG | U | Unique |
17 | Deschappelles | 2007 | TACTGCGGATCATAACCAAGCTTG | U | Unique |
18 | Jacmel | 2006 | TAXTCCGGATTGTCACCAAGCTTG | U | Unique |
19 | Jacmel | 2007 | TACTGCGGATCATAAACAAACTTG | U | Unique |
20† | Jeremie | 2007 | TACXCXAGATTXTCXXTACACTTG | U | Unique |
21 | Jeremie | 2007 | TATTGCGGATTACACCCTAGCCTG | U | Unique |
24 | Cap-Haitien | 2006 | TXCXCCGGAXTXCCCXCAAGXTTG | U | Unique |
25 | Les Cayes | 2006 | TACTGCAGATCGTACCTTAGCCTG | U | Unique |
26 | Les Cayes | 2006 | TACCCCGGACCGCAACCTAAATTG | U | Unique |
28 | Les Cayes | 2007 | TATTCCAGATCGTCCCTTAGACTG | U | Unique |
29 | Les Cayes | 2007 | TAXTGCGGATTGTCACCTAACTTG | U | Unique |
32 | Les Cayes | 2007 | TACCCCGGATTXCACCCAAACTTG | U | Unique |
34 | Les Cayes | 2007 | TACTCCGGACCGCACCCTAAATTG | U | Unique |
37 | Les Cayes | 2007 | TACTCCGGACTACCCCCTAACTTG | U | Unique |
39 | Les Cayes | 2007 | TATCGCAGATTACCAATAAGCCTG | U | Unique |
41 | Les Cayes | 2007 | TATTCCGGATXACCCACTAGCTTG | U | Unique |
42 | Les Cayes | 2007 | TATTCGGGATTATCCACTAGATTG | U | Unique |
45 | Les Cayes | 2007 | TACXGXAGATTXTCCCCACGCTTG | U | Unique |
46 | Les Cayes | 2007 | TACTGCGGACCGXCCCCTAACCTG | U | Unique |
47 |
Les Cayes |
2007 |
TACTGCAGACTXCCCCCACGCTTG |
U |
Unique |
*X indicates missing data, where neither the major or minor allele could be detected. †Sample 20 from Jeremie revealed the possible presence of both alleles by mutation-specific restriction–endonuclease digestion and DNA sequencing. |