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Volume 23, Number 1—January 2017
Letter

Whole-Genome Characterization of a Novel Human Influenza A(H1N2) Virus Variant, Brazil

Paola Cristina ResendeComments to Author , Priscila Silva Born, Aline Rocha Matos, Fernando Couto Motta, Braulia Costa Caetano, Maria do Carmo Debur, Irina Nastassja Riediger, David Brown, and Marilda M. Siqueira
Author affiliations: Oswaldo Cruz Institute, Rio de Janeiro, Brazil (P.C. Resende, P.S. Born, A.R. Matos, F.C. Motta, B.C. Caetano, D. Brown, M.M. Siqueira); Central Laboratory of the State of Parana, Curitiba, Brazil (M.C. Debur, I.N. Riediger)

Main Article

Table

Highest degree of gene identity of the influenza A/Parana/720/2015 (H1N2)v subtype strain identified from a patient in Brazil with other swine and human strains*

Gene segment BLAST hits† % Identity
PB2
 A/swine/Brazil/185-11-7/2011(H1N2) 98
A/San Diego/INS194/2009(H1N1)
 98
PB1
 A/swine/Brazil/185-11-7/2011(H1N2) 99
A/Singapore/GN285/2009(H1N1)
 98
PA
 A/swine/Brazil/185-11-7/2011(H1N2) 98
A/Texas/67/2009(H1N1)
 98
HA
 A/swine/Brazil/185-11-7/2011(H1N2) 97
A/New York/487/2003(H1N2)
 95
NP
 A/swine/Brazil/185-11-7/2011(H1N2) 99
A/Tennessee/F1057c56/2010(H1N1)
 98
NA
 A/swine/Brazil/185-11-7/2011(H1N2) 97
A/Malaysia/17392/1998(H3N2)
 93
M
 A/swine/Brazil/185-11-7/2011(H1N2) 99
A/Mexico City/INER16/2009(H1N1)
 99
NS A/swine/Brazil/185-11-7/2011(H1N2) 98
A/Singapore/TT454/2010(H1N1) 98

*Sequence submitted to GISAID (http://platform.gisaid.org; submission no. EPI_ISL_223342). HA, hemagglutinin gene; M, matrix gene; NA, neuraminidase gene, NP, nucleoprotein gene; NS, nonstructural protein gene; PB2, polymerase basic 2 gene; PB1, polymerase basic gene; PA, polymerase acid gene.
†Sequence with major identity on BLAST.

Main Article

Page created: December 16, 2016
Page updated: December 16, 2016
Page reviewed: December 16, 2016
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
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