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Volume 26, Number 5—May 2020
Dispatch

Genetic Characterization of Japanese Encephalitis Virus Genotype 5 Isolated from Patient, South Korea, 2015

Jae Hoon Woo1, Young Eui Jeong1, Jung Eun Jo, Sang-Mu Shim, Jungsang Ryou, Kyung-Chang Kim, Won Ja Lee, and Joo-Yeon LeeComments to Author 
Author affiliations: Centers for Disease Control and Prevention, Chongju, South Korea (J.H. Woo, Y.E. Jeong, J.E. Jo, S.-M. Shim, J. Ryou, K.-C. Kim, W.J. Lee, J.-Y. Lee); MIRIMEDIX Corporation, Gangwon, South Korea (Y.E. Jeong)

Main Article

Table 1

Data on 67 JEV strains analyzed in study of JEV in patient samples from South Korea*

Strain GenBank accession no. Country Year Genotype Host
ME802 KY927819 Cambodia 2013 1 Human
XJ69 EU880214 China 2007 1 Mosquito
YN0967 JF706268 China 2009 1 Mosquito
SH53 JN381850 China 2001 1 NA
SD0810 JF706286 China 2008 1 Mosquito
HN0626 JN381837 China 2006 1 NA
HN0421 JN381841 China 2004 1 NA
GX0519 JN381835 China 2005 1 NA
131V GU205163 China 2007 1 Human
GSBY0801 JF706274 China 2008 1 Mosquito
GS07TS11 JN381843 China 2007 1 NA
XJP613 EU693899 China 2007 1 Mosquito
SH80 JN381848 China 2001 1 NA
SH17M-07 EU429297 China 2007 1 Mosquito
SCYA201201 KM658163 China 2012 1 Swine
SC04–17 GU187972 China 2004 1 Mosquito
JX61 GU556217 China 2008 1 Swine
HEN0701 FJ495189 China 2007 1 Swine
GZ56 HM366552 China 2008 1 Human
XZ0938 HQ652538 China (Tibet) 2009 1 Mosquito
Ishikawa AB051292 Japan 1998 1 Mosquito
KV1899 AY316157 South Korea 1999 1 NA
K94P05 AF04551 South Korea 1994 1 Mosquito
K05GS KR908702 South Korea 2005 1 Mosquito
TC2009–1 JF499790 Taiwan 2009 1 Mosquito
4790–85 GQ902062 Thailand 1985 1 Human
90VN70 HM228921 Vietnam 1990 1 Human
FU AF217620 Australia 1995 2 NA
C17 KX945367 Angola 2016 3 Human
SH3 JN381864 China 1987 3 NA
P3 U47032 China 1949 3 Human
GD JN711458 China 2009 3 Bat
FJ0339 JN381859 China 2003 3 NA
Fj02–29 JF706273 China 2002 3 Human
Beijing-1 L48961 China 1949 3 Human
SA14 KU323483 China 1954 3 NA
SA14–14–2 AF315119 China 1954 3 Vaccine stain
B58 FJ185036 China 1986 3 Bat
HW AY849939 China 1988 3 NA
Whe EF107523 China 1988 3 Swine
GB30 FJ185037 China 1997 3 Bat
SH0601 EF543861 China 2006 3 NA
Vellore P20778 AF080251 India 1958 3 NA
04940–4 EF623989 India 2002 3 Mosquito
IND-WB-JE2 JX072965 India 2010 3 Human
GP78 AF075723 India 1978 3 NA
57434 EF623988 India 2005 3 Human
Nakayama EF571853 Japan 1935 3 Human
JaOArS982 M18370 Japan 1982 3 Mosquito
JaOH0566/Japan/1966/human AY508813 Japan 1966 3 NA
JaTAn1/75 AB551990 Japan 1975 3 Swine
ML17 AY508812 Japan 1981 3 NA
K87P39 AY585242 South Korea 1987 3 Mosquito
T1P1 AF254453 Taiwan 1997 3 Mosquito
Ling L78128 Taiwan 1965 3 Human
JKT6468 AY184212 Indonesia 1981 4 Mosquito
XZ0934 JF915894 China (Tibet) 2009 5 Mosquito
Muar HM596272 Malaysia 1952 5 Human
10–1827 JN587258 South Korea 2010 5 Mosquito
K12HC959 KJ420589 South Korea 2012 5 Mosquito
K12AS1148 KJ420590 South Korea 2012 5 Mosquito
K12AS1151 KJ420591 South Korea 2012 5 Mosquito
K12YJ1174 KJ420593 South Korea 2012 5 Mosquito
K12YJ1182 KJ420594 South Korea 2012 5 Mosquito
K12YJ1203 KJ420592 South Korea 2012 5 Mosquito
K13GB57 KM496503 South Korea 2013 5 Mosquito

*JEV, Japanese encephalitis virus; NA, not available.

Main Article

1These authors contributed equally to this article.

Page created: April 16, 2020
Page updated: April 16, 2020
Page reviewed: April 16, 2020
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
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