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Volume 26, Number 8—August 2020

SARS-CoV-2 Phylogenetic Analysis, Lazio Region, Italy, February–March 2020

Barbara Bartolini, Martina Rueca, Cesare Ernesto Maria Gruber, Francesco Messina, Fabrizio Carletti, Emanuela Giombini, Eleonora Lalle, Licia Bordi, Giulia Matusali, Francesca Colavita, Concetta Castilletti, Francesco Vairo, Giuseppe Ippolito, Maria Rosaria Capobianchi, and Antonino Di CaroComments to Author 
Author affiliations: National Institute for Infectious Diseases “Lazzaro Spallanzani” IRCCS, Rome, Italy

Main Article

Table 2

Consensus sequences of severe acute respiratory syndrome coronavirus 2 samples, Italy, 2020*

Wuhan-Hu-1 strain Nucleotide position INMI3 INMI4 INMI5 INMI6 INMI7 INMI9 INMI8 INMI10 Amino acid Region
A 187 G Noncoding UTR
C 241 T T T T T T T T Noncoding UTR
C 2062 T Noncoding UTR
C 3037 T T T T T T T T Syn Orf1ab
G 4255 T Syn Orf1ab
C 14408 T T T T T T T T P4715L Orf1ab
T 16456 G S5398A Orf1ab
A 20268 G Syn Orf1ab
C 21575 T L5F Spike glycoprotein
A 23403 G G G G G G G G D614G Spike glycoprotein
C 23575 T Syn Spike glycoprotein
A 26530 G D3G Membrane glycoprotein
C 28881 A R203K Nucleocapsid protein
G 28882 A R203K Nucleocapsid protein


Nucleocapsid protein
*Nucleotide positions refer to the Wuhan-Hu-1 reference genome (GenBank accession no. MN908947). Orf, open reading frame; Syn, synonymous substitution; UTR, untranslated region.

Main Article

Page created: May 20, 2020
Page updated: July 18, 2020
Page reviewed: July 18, 2020
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