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Volume 27, Number 8—August 2021
Research Letter

Molecular Detection and Characterization of Rickettsia asembonensis in Human Blood, Zambia

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Lavel C. Moonga, Kyoko HayashidaComments to Author , Namwiinga R. Mulunda, Yukiko Nakamura, James Chipeta1, Hawela B. Moonga, Boniface Namangala, Chihiro Sugimoto, Zephaniah Mtonga, Mable Mutengo, and Junya Yamagishi
Author affiliations: Hokkaido University, Sapporo, Japan (L.C. Moonga, K. Hayashida, Y. Nakamura, C. Sugimoto, J. Yamagishi); University of Zambia, Lusaka, Zambia (N.R. Mulunda, J. Chipeta, B. Namangala, M. Mutengo); National Malaria Control Center, Lusaka (H.B. Moonga); Chongwe District Hospital, Lusaka (Z. Mtonga); Levy Mwanawasa Medical University, Lusaka (M. Mutengo)

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Rickettsia asembonensis is a flea-related Rickettsia with unknown pathogenicity to humans. We detected R. asembonensis DNA in 2 of 1,153 human blood samples in Zambia. Our findings suggest the possibility of R. asembonensis infection in humans despite its unknown pathogenicity.

Rickettsia asembonensis is a fleaborne rickettsia closely related to Rickettsia felis and is thus referred to as an R. felis–like organism. R. asembonensis was first detected in cat fleas in Kenya and subsequently reported worldwide (1,2). Although R. felis has been increasingly recognized as a human infective agent that can cause human febrile disease, the infectivity and pathogenicity of R. asembonensis in humans is largely unknown. Recent investigations in patients with febrile illness and petechial lesions identified R. asembonensis DNA and antibodies for rickettsial antigens in Malaysia (3,4). Furthermore, R. asembonensis was isolated in cellular cultures from patients in Peru with acute febrile illness and confirmed by sequencing (5). These reports suggest the possibility of R. asembonensis as a human infective agent. However, no direct evidence of R. felis and R. asembonensis as an etiologic agent of human illness has been established. A previous study in Zambia revealed the predominant existence of R. asembonensis and R. felis in cat fleas (6). Our study investigates the presence of these rickettsiae in human blood in Zambia.

We obtained 753 residual patient blood samples from hospitals in urban Lusaka (n = 519) and the Chongwe District (n = 234) of Zambia. Approximately half of the samples (303/753) were traceable to clinical records of patients. The common clinical conditions among these patients included fever, anemia, meningitis, septicemia, and sickle cell anemia (Appendix Table 1). In addition, we obtained dried blood spots on Whatman FTA classic cards (Millipore Sigma, from healthy volunteers from rural eastern (n = 200) and central (n = 200) provinces to assess rickettsia infection in healthy rural persons. The study was approved by the National Health Research Authority of Zambia through the Biomedical Research Ethics Committee (reference no. 007-10-18).

We extracted genomic DNA and subjected it to PCR screening that targeted the citrate synthase gene (gltA) of Rickettsia. We subjected the positive samples to multiple-gene sequencing analysis targeting the 17-kDa common antigen (htrA), outer membrane protein A (OmpA), and outer membrane protein B (OmpB) genes using previously described primers (Appendix Table 2). We aligned the sequences using MAFFT ( and performed phylogenetic analysis by the neighbor-joining method using MEGA7 ( We determined the estimated Rickettsia bacterial burden in Rickettsia-positive blood samples by OmpA quantitative PCR by using published primers. We further testsed the gltA PCR-positive samples for malaria by nested PCR (Appendix Table 2).


Phylogenetic tree of Rickettsia felis and R. felis–like organisms based on the sequences of the gltA gene (581 bp) from human blood samples collected from Zambia, 2019 (in bold). The tree was constructed using the neighbor-joining method with the maximum-likelihood model. Bootstrap values are shown on nodes based on 1,000 replicates. Sequences are identified by species name, GenBank accession number, host, and country of detection. Scale bar indicates nucleotide substitutions per site.

Figure. Phylogenetic tree of Rickettsia felis and R. felis–like organisms based on the sequences of the gltAgene (581 bp) from human blood samples collected from...

We detected R. asembonensis in 0.39% (2/519) samples from the urban Lusaka District by gltA PCR. The samples from the Chongwe District and the rural areas of the eastern and central provinces were all negative, although the possibility that dried blood spot samples from rural areas might have lower detection sensitivity cannot be ruled out. BLAST analysis ( of the gltA sequences obtained (GenBank accession nos. LC557154 and LC557155) showed 100% homology to R. asembonensis identified in cat fleas from human dwellings and domestic dogs in 3 countries: Senegal (GenBank accession no. JF966774), Kenya (accession no. JN315968), and Zambia (accession no. LC431490) (6,7). Comparing the sequenced gltA with those detected in fleas from Peru (GenBank accession no. KY650697) and other regions in the Americas showed 99.8% similarity. Phylogenetic analysis of gltA confirmed the detected sequences’ closer relatedness by clustering with genes from cat fleas from sub-Saharan Africa, a distinct cluster from other regions (Figure). The OmpA, OmpB, and htrA sequences showed clustering without regional discrimination (data not shown). The obtained nucleotides are available in GenBank under accession nos. LC557154–61. Detection of genotypically similar R. asembonensis in persons and cat fleas in Zambia suggests possible human infection by R. asembonensis through cat flea bites. Nevertheless, the epidemiologic cycle and pathogenicity of R. asembonensis and other related R. felis–like organisms remain to be elucidated.

The patient identified as UTH_185 in whom R. asembonensis was detected had a medical record of anemia and weight loss (Table). The malaria test was negative. Despite the limited association of Rickettsia infection with anemia, severe R. felis infection has been reported with severe anemia, possibly attributable to hemorrhage from vascular damage in rickettsial disease (8). However, the observed evidence was limited and could not establish R. asembonensis as the cause of these symptoms. The second R. asembonensis–positive sample from the patient identified as UTH_231 had limited clinical information, which did not allow for further interpretation. The 2 R. asembonensis–positive blood samples showed estimated DNA quantities of 890,000 copies/mL of blood from patient UTH_185 and 2,100,000 copies/mL of blood from patient UTH_231 (Table). These results are within the same range as a previous study for Rickettsia rickettsii estimated rickettsial burden (9).

In conclusion, detection of R. asembonensis of identical genotype in cat fleas and human blood in Zambia suggests possible transmission from cat fleas to humans. Given the worldwide distribution of R. asembonensis, further studies to elucidate its pathogenicity and epidemiologic cycle are warranted.

Dr. Moonga is a postdoctoral research fellow at Hokkaido University. His research interests include arthropodborne zoonoses, specifically fleaborne rickettsia infections as a possible cause of febrile illness, and developing rapid molecular diagnostic tools.



This study was supported by the Japan Agency for Medical Research and Development (grant no. JP21wm0125008). The funder had no role in the design of the study, data collection, analysis, decision to publish, or preparation of the manuscript. This work is dedicated to the memory of James Chipeta. May his soul rest in peace.



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Cite This Article

DOI: 10.3201/eid2708.203467

Original Publication Date: July 13, 2021


Table of Contents – Volume 27, Number 8—August 2021

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Kyoko Hayashida, Hokkaido University, International Institute for Zoonosis Control, Division of Collaboration and Education, Kita 20 Nishi 10, Kita-Ku, Sapporo 001-0020, Hokkaido, Japan

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Page created: July 13, 2021
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