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Volume 28, Number 3—March 2022
Synopsis

Association of Healthcare and Aesthetic Procedures with Infections Caused by Nontuberculous Mycobacteria, France, 2012‒2020

Côme DaniauComments to Author , Emmanuel Lecorche, Faiza Mougari, Hanaa Benmansour, Claude Bernet, Hervé Blanchard, Jérôme Robert, Anne Berger-Carbonne, and Emmanuelle Cambau
Author affiliations: Santé Publique France, Saint-Maurice, France (C. Daniau, A. Berger-Carbonne); Université de Paris, Paris, France (E. Lecorche, E. Cambau); Assistance Publique Hôpitaux de Paris, Paris (E. Lecorche, F. Mougari, H. Benmansour, H. Blanchard, J. Robert, E. Cambau); Centre National de Référence des Mycobactéries et de la Résistance des Mycobactéries aux Antituberculeux, Paris (E. Lecorche, F. Mougari, H. Benmansour, J. Robert, E. Cambau); Centre d’Appui pour la Prévention des Infections Associées aux Soins en Provence-Alpes-Côte-d’Azur, Lyon, France (C. Bernet); Centre d’Appui pour la Prévention des Infections Associées aux Soins en Île-de-France, Paris (H. Blanchard); Centre d’Immunologie et des Maladies Infectieuses (CIMI),; Sorbonne Université, Paris (J. Robert)

Main Article

Figure 2

Genomic comparison of nontuberculous mycobacteria isolates by using whole-genome sequencing phylogenetic analysis and maximum parsimony trees. A) Mycobacterium chimaera, B) M. fortuitum, C) M. chelonae, D) M. marinum, E) M. mucogenicum, F) M. neoaurum. Environmental isolates are indicated in blue, and clinical isolates are indicated in red. Additional information for the 6 Mycobacterium species tested is provided in the Appendix. Ref, referent. Panel A: Based on 19,621 single-nucleotide polymorphisms (SNPs) generated from comparison of 16 genomes using square root scaling. Isolates were 1) clinical isolates from 2 patients who had M. chimaera disseminated disease after open-heart surgery (A1 and A2 from the first patient), A3 from the second patient; 2) a reference genome from a previously described epidemic patient (8); 3) 10 heater-cooler unit water samples from the hospital where the second patient underwent surgery, collected 4 years after the report (A4‒A13); 4) clinical sample from a patient who had a breast prosthesis infection (B1); and 5) the environmental isolate collected in the hospital’s water network 1 year after the report of the breast prosthesis infection (B2). Panel B: Based on 27,796 SNPs generated from comparison of 4 genomes using square root scaling. Isolates were 1) clinical isolate from a patient who had M. fortuitum breast prosthesis infection (C1) and 2) environmental isolate collected 1 month after the report in the water supply network in the shower of the patient’s hospital room (C2, C3). Panel C: Based on 67,759 SNPs generated from comparison of 24 genomes using square root scaling. Isolates were 11 clinical isolates: 1 from an infection after face lift surgery (D1), 3 from 2 skin and soft tissue infections after a tattoo (E1‒E2 from the same patient and E3 from another patient who was tattooed in the same tattoo parlor); 2 from 2 mesotherapy infections from 2 nonrelated reports (F1 and G1); and 5  using supply networks were obtained for investigations including: 1 isolate from a surgical sink (D2), 4 isolates from a doctor’s office sink (F2‒F3, G5‒G6), 2 isolates from a tattoo parlor’s sink used to dilute the ink (E4‒E5) and 5 isolates from a patient’s home (F4‒F5, G2‒G4). Panel D: Based on 24,757 SNPs generated from comparison of 4 genomes using square root scaling. Isolates were 1) a clinical isolate from a skin and soft tissue infection caused by contamination after a bath in a balneotherapy swimming pool (I1 and I2) 2 environmental isolates from the swimming pool (I2 and I3). Panel E: Based on 53,551 SNPs generated by comparison of 8 genomes using square root scaling. Isolates were 1) 3 clinical isolates from catheter-associated infections (3 patients J1‒J3) and 2) 4 environmental isolates from hospital water supply networks (J4‒J7). Panel F: Based on 58,473 SNPs generated by comparison of 4 genomes using square root scaling. Isolates were 1) 2 clinical isolates from the blood culture (K1 and K2) of 1 patient and 2) 1 isolate from microbiological control after an autologous stem cell transplant (K3).

Figure 2. Genomic comparison of nontuberculous mycobacteria isolates by using whole-genome sequencing phylogenetic analysis and maximum parsimony trees. A) Mycobacterium chimaera, B) M. fortuitum, C) M. chelonae, D) M. marinum, E) M. mucogenicum, F) M. neoaurum. Environmental isolates are indicated in blue, and clinical isolates are indicated in red. Additional information for the 6 Mycobacterium species tested is provided in the Appendix. Ref, referent. Panel A: Based on 19,621 single-nucleotide polymorphisms (SNPs) generated from comparison of 16 genomes using square root scaling. Isolates were 1) clinical isolates from 2 patients who had M. chimaera disseminated disease after open-heart surgery (A1 and A2 from the first patient), A3 from the second patient; 2) a reference genome from a previously described epidemic patient (8); 3) 10 heater-cooler unit water samples from the hospital where the second patient underwent surgery, collected 4 years after the report (A4‒A13); 4) clinical sample from a patient who had a breast prosthesis infection (B1); and 5) the environmental isolate collected in the hospital’s water network 1 year after the report of the breast prosthesis infection (B2). Panel B: Based on 27,796 SNPs generated from comparison of 4 genomes using square root scaling. Isolates were 1) clinical isolate from a patient who had M. fortuitum breast prosthesis infection (C1) and 2) environmental isolate collected 1 month after the report in the water supply network in the shower of the patient’s hospital room (C2, C3). Panel C: Based on 67,759 SNPs generated from comparison of 24 genomes using square root scaling. Isolates were 11 clinical isolates: 1 from an infection after face lift surgery (D1), 3 from 2 skin and soft tissue infections after a tattoo (E1‒E2 from the same patient and E3 from another patient who was tattooed in the same tattoo parlor); 2 from 2 mesotherapy infections from 2 nonrelated reports (F1 and G1); and 5 using supply networks were obtained for investigations including: 1 isolate from a surgical sink (D2), 4 isolates from a doctor’s office sink (F2‒F3, G5‒G6), 2 isolates from a tattoo parlor’s sink used to dilute the ink (E4‒E5) and 5 isolates from a patient’s home (F4‒F5, G2‒G4). Panel D: Based on 24,757 SNPs generated from comparison of 4 genomes using square root scaling. Isolates were 1) a clinical isolate from a skin and soft tissue infection caused by contamination after a bath in a balneotherapy swimming pool (I1 and I2) 2 environmental isolates from the swimming pool (I2 and I3). Panel E: Based on 53,551 SNPs generated by comparison of 8 genomes using square root scaling. Isolates were 1) 3 clinical isolates from catheter-associated infections (3 patients J1‒J3) and 2) 4 environmental isolates from hospital water supply networks (J4‒J7). Panel F: Based on 58,473 SNPs generated by comparison of 4 genomes using square root scaling. Isolates were 1) 2 clinical isolates from the blood culture (K1 and K2) of 1 patient and 2) 1 isolate from microbiological control after an autologous stem cell transplant (K3).

Main Article

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Page created: December 03, 2021
Page updated: February 21, 2022
Page reviewed: February 21, 2022
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
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