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Volume 28, Number 7—July 2022
Research

One Health Genomic Analysis of Extended-Spectrum β-Lactamase‒Producing Salmonella enterica, Canada, 2012‒2016

Amrita BharatComments to Author , Laura Mataseje, E. Jane Parmley, Brent P. Avery, Graham Cox, Carolee A. Carson, Rebecca J. Irwin, Anne E. Deckert, Danielle Daignault, David C. Alexander, Vanessa Allen, Sameh El Bailey, Sadjia Bekal, Greg J. German, David Haldane, Linda Hoang, Linda Chui, Jessica Minion, George Zahariadis, Richard J. Reid-Smith, and Michael R. Mulvey
Author affiliations: Public Health Agency of Canada, Winnipeg, Manitoba, Canada (A. Bharat, L. Mataseje, G. Cox, M.R. Mulvey); University of Manitoba, Winnipeg (A. Bharat, G. Cox, M.R. Mulvey); Public Health Agency of Canada, Guelph, Ontario, Canada (E.J. Parmley, B.P. Avery, C.A. Carson, R.J. Irwin, A.E. Deckert, R.J. Reid-Smith); University of Guelph, Guelph (E.J. Parmley); Public Health Agency of Canada, St. Hyacinthe, Quebec, Canada (D. Daignault); Cadham Provincial Laboratory, Winnipeg (D.C. Alexander); Public Health Ontario Laboratories, Toronto, Ontario, Canada (V. Allen); Horizon Health Network, Saint John, New Brunswick, Canada (S. El Bailey); Laboratoire de Santé Publique du Quebec, Sainte-Anne-de-Bellevue, Quebec, Canada (S. Bekal); Queen Elizabeth Hospital, Charlottetown, Prince Edward Island, Canada (G.J. German); Queen Elizabeth II Health Sciences Centre, Halifax, Nova Scotia, Canada (D. Haldane); British Columbia Center for Disease Control, Vancouver, British Columbia, Canada (L. Hoang); Public Health Laboratory, Edmonton, Alberta, Canada (L. Chiu); University of Alberta, Edmonton (L. Chui); Roy Romanow Provincial Laboratory, Regina, Saskatchewan, Canada (J. Minion); Newfoundland and Labrador Public Health and Microbiology Laboratory, St. John’s, Newfoundland, Canada (G. Zahariadis)

Main Article

Figure 4

Alignment of Salmonella blaSHV-2 plasmids from human and animals/meat sources, Canada. Closed plasmids were produced by hybrid assembly of short and long read sequencing by using Unicycler (https://bio.tools/unicycler). Plasmids were aligned by using the pangenome feature of the GView server (https://server.gview.ca). Animals/meat sample identifications start with the letter N, and human sample identifications start with a 2-digit number. Plasmids were classified as Type A, B, or C based on their resistance gene profiles and overall similarity. All plasmids belong to the IncI1 incompatibility group.

Figure 4. Alignment of Salmonella blaSHV-2 plasmids from human and animals/meat sources, Canada. Closed plasmids were produced by hybrid assembly of short and long read sequencing by using Unicycler (https://bio.tools/unicycler). Plasmids were aligned by using the pangenome feature of the GView server (https://server.gview.ca). Animals/meat sample identifications start with the letter N, and human sample identifications start with a 2-digit number. Plasmids were classified as Type A, B, or C based on their resistance gene profiles and overall similarity. All plasmids belong to the IncI1 incompatibility group.

Main Article

Page created: May 03, 2022
Page updated: June 18, 2022
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