Volume 6, Number 4—August 2000
Phylogenetic Analysis of the Chinese Rickettsia Isolate BJ-90
To the Editor: Five species of tick-associated rickettsiae have been identified in China; of these, three are human pathogens and two are of unknown pathogenicity (1). In 1990, one isolate, BJ-90, was first obtained from a Dermacentor sinicus tick, a newly recognized vector collected in a Beijing suburb, an atypical location for Rickettsia sibirica (2). Several taxonomic studies of the phenotype, antigenicity, and genotype of BJ-90 have been performed, with inconsistent results (2-6). Recently, phylogenetic analysis based on several gene comparisons has enabled the phylogenetic classification of this rickettsial species (7-11). To confirm the phylogenetic relationships between the BJ-90 strain and other rickettsiae, the 16S rRNA, gltA, and OmpA encoding genes were amplified and sequenced. Phylogenetic relationships between the BJ-90 strain and other rickettsia in the GenBank database were inferred by the parsimony and neighbor-joining methods (9). Bootstrap analyses were used to assess the reliability of the phylogenetic analysis.
Both methods showed a high degree of similarity between BJ-90, R. sibirica and R. mongolotimonae, which were grouped in the same cluster in three inferred dendrograms. The data from the 16S rRNA and gltA sequences showed low statistical significance in the cluster (bootstrap values for the nodes 50% and 33%, respectively). However, data from the rompA gene sequence showed highly significant similarity in the cluster (bootstrap value 100%), confirming the reliability of the phylogenetic analysis. The results of this phylogenetic analysis are consistent with those of previous phenotypic, genotypic, and phylogenetic analyses (2,3,5-11), as well as taxonomy derived from direct antigenic comparison of the species (4). The sequences of 16S rRNA, gltA, and OmpA have been assigned the following GenBank accession numbers: AF178036 for 16S rRNA, AF178035 for gltA, AF179365 for the 611-bp sequence of ompA, and AF179367 for the 3174-bp sequence of ompA. According to previous genotypic and antigenic studies and our phylogenetic analysis, in which the BJ-90 strain is closer to R. sibirica than R. mongolotimonae in the dendrogram inferred from comparison of the ompA encoding gene sequences, the BJ-90 strain should be considered a variant of R. sibirica.
- Fan MY, Zhang JZ, Chen M, Yu XJ. Spotted fever group rickettsioses in China. In: Rickettsiae and rickettsial diseases at the turn of the third millennium. Raoult D, Brouqui P, editors. Paris: Elsevier; 1999. p. 247-57.
- Yu XJ, Fan MY, Bi DZ. Primary identification of spotted fever group rickettsiae isolated from Dermacentor sinicus in the Beijing area. Chin J Microbiol Immunol. 1991;11:305.
- Yu XJ, Jin Y, Fan MY, Xu GM, Liu QH, Raoult D. Genotypic and antigenic identification of two new strains of spotted fever group rickettsiae isolated from China. J Clin Microbiol. 1993;31:83–9.PubMedGoogle Scholar
- Xu WB, Raoult D. Taxonomic relationships among spotted fever group Rickettsiae as revealed by antigenic analysis with monoclonal antibodies. J Clin Microbiol. 1997;36:887–96.
- Chen M, Fan MY, Bi DZ, Zhang JZ. Sequence analysis of PCR products amplified from five strains of spotted fever group rickettsiae with Rr with Rr 190. 70p and Rr 190. 602n primers. Acta Virol. 1998;42:91–3.PubMedGoogle Scholar
- Zhang JZ, Fan MY, Bi DZ. Isolation and identification of spotted fever group rickettsiae BJ-93 strain. Chin J Microbiol Immunol. 1997;1:28–33.
- Fournier PE, Roux V, Raoult D. Phylogenetic analysis of spotted fever group rickettsiae by study of the outer surface protein OmpA. Int J Syst Bacteriol. 1998;48:839–49. DOIPubMedGoogle Scholar
- Roux V, Raoult D. Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing. Res Microbiol. 1995;146:385–96. DOIPubMedGoogle Scholar
- Roux V, Rydkina E, Eremeeva M, Raoult D. Citrate synthase gene comparison, a new tool for phylogenetic analysis, and its application for the rickettsiae. Int J Syst Bacteriol. 1997;47:252–61. DOIPubMedGoogle Scholar
- Stothard DR, Fuerst PA. Evolution analysis of the spotted fever and typhus group of Rickettsia using 16S rRNA gene sequences. Syst Appl Microbiol. 1995;18:52–61.
- Weisburg WG, Dobson ME, Samuel JE, Dasch GA, Mallavia LP, Baca O, Phylogenetic diversity of the rickettsiae. J Bacteriol. 1989;171:4202–6.PubMedGoogle Scholar
Table of Contents – Volume 6, Number 4—August 2000
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