Volume 16, Number 6—June 2010
Research
Rift Valley Fever during Rainy Seasons, Madagascar, 2008 and 2009
Table
Features of 46 sequenced Rift Valley fever viruses, Madagascar, 2008–2009
Code | Species | Sample type | Sampling date | District of sampling | Coding sequences |
||
---|---|---|---|---|---|---|---|
Small | Medium | Large | |||||
212-08 | Human | Serum | 2008 Jan 30 | Tolagnaro | Yes | Yes | Yes |
406-08 | Bovine | Fetal liver | 2008 Feb 20 | Miarinarivo | Yes | Yes | Yes |
413-08 | Bovine | Fetal liver | 2008 Feb 20 | Antsirabe II | Yes | Yes | Yes |
427-08 | Human | Serum | 2008 Feb 22 | Anjozorobe | Yes | Yes | Yes |
428-08 | Human | Serum | 2008 Feb 15 | Anjozorobe | Yes | Yes | Yes |
435-08 | Bovine | Serum | 2008 Feb 22 | Anjozorobe | Yes | No | Yes |
437-08 | Bovine | Serum | 2008 Feb 22 | Anjozorobe | Yes | No | No |
448-08 | Human | Serum | 2008 Feb 26 | Anjozorobe | Yes | Yes | Yes |
449-08 | Human | Serum | 2008 Feb 26 | Anjozorobe | Yes | No | Yes |
619-08 | Human | Serum | 2008 Mar 9 | Ankazobe | Yes | Yes | Yes |
682-08 | Human | Serum | 2008 Mar 12 | Ambatondrazaka | Yes | Yes | Yes |
683-08 | Human | Serum | 2008 Mar 12 | Ambatondrazaka | Yes | Yes | Yes |
684-08 | Human | Serum | 2008 Mar 12 | Ambatondrazaka | Yes | Yes | Yes |
693-08 | Human | Serum | 2008 Mar 11 | Amparafaravola | Yes | Yes | Yes |
776-08 | Human | Serum | 2008 Mar 14 | Ambatondrazaka | Yes | Yes | Yes |
779-08 | Human | Serum | 2008 Mar 16 | Amparafaravola | Yes | No | Yes |
845-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
846-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
847-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
848-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
849-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
850-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | No |
851-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
852-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
853-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
854-08 | Human | Serum | 2008 Mar 23 | Manjakandriana | Yes | Yes | Yes |
855-08 | Bovine | Serum | 2008 Mar 24 | Manjakandriana | Yes | Yes | Yes |
856-08 | Bovine | Serum | 2008 Mar 24 | Manjakandriana | Yes | No | Yes |
857-08 | Bovine | Serum | 2008 Mar 24 | Manjakandriana | Yes | No | No |
859-08 | Bovine | Serum | 2008 Mar 24 | Manjakandriana | Yes | No | Yes |
863-09 | Human | Serum | 2008 Mar 25 | Antananarivo | Yes | Yes | Yes |
878-09 | Human | Serum | 2008 Mar 26 | Amparafaravola | Yes | Yes | Yes |
879-08 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | Yes |
889-08 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | No |
892-09 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | Yes |
895-09 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | Yes |
897-08 | Human | Serum | 2008 Mar 26 | Manjakandriana | Yes | Yes | Yes |
1464-08 | Human | Serum | 2008 Mar 28 | Tolagnaro | Yes | Yes | Yes |
1585-08 | Caprine | Serum | 2008 Apr 13 | Antsiranana I | Yes | Yes | Yes |
1586-08 | Human | Serum | 2008 Apr 15 | Antavy Atsimo | Yes | Yes | Yes |
1627-08 | Bovine | Serum | 2008 Apr 18 | Ambalavao | Yes | Yes | Yes |
1695-08 | Ovine | Serum | 2008 Apr 20 | Antsiranana II | Yes | Yes | Yes |
1730-08 | Bovine | Spleen | 2008 Apr 25 | Fianarantsoa I | Yes | Yes | Yes |
2032-08 | Human | Serum | 2008 May 25 | Amparafaravola | Yes | Yes | Yes |
2033-08 | Human | Serum | 2008 Apr 29 | Amparafaravola | Yes | Yes | Yes |
2034-08 | Human | Serum | 2008 Apr 23 | Amparafaravola | Yes | Yes | Yes |
6510-08 | Bovine | Liver | 2008 Dec 1 | Fianarantsoa I | Yes | Not done | Not done |
6546-08 | Bovine | Liver | 2008 Nov 28 | Fianarantsoa I | Yes | Not done | Not done |
6547-08 | Bovine | Liver | 2008 Nov 29 | Fianarantsoa II | Yes | Not done | Not done |
6660-08 | Human | Serum | 2008 Dec 12 | Fianarantsoa I | Yes | Not done | Not done |