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Volume 30, Number 8—August 2024
Dispatch

Real-Time Enterovirus D68 Outbreak Detection through Hospital Surveillance of Severe Acute Respiratory Infection, Senegal, 2023

Mamadou Malado Jallow, Marie Pedapa Mendy, Mamadou Aliou Barry, Moussa Moise Diagne, Samba Niang Sagne, Fatime Tall, Jean Baptisse Niokhor Diouf, Ndiendé Koba Ndiaye, Davy Kiori, Sara Sy, Déborah Goudiaby, Cheikh Loucoubar, Gamou Fall, Hervé Kadjo, Maël Bessaud, and Ndongo DiaComments to Author 
Author affiliations: Institut Pasteur de Dakar, Dakar, Senegal (M.M. Jallow, M.P. Mendy, M.A. Barry, M.M. Diagne, S.N. Sagne, N.K. Ndiaye, D. Kiori, S. Sy, D. Goudiaby, C. Loucoubar, G. Fall, N. Dia); Hôpital des enfants Albert Royer de Fann, Dakar (F. Tall); Hôpital Roi Baudoin de Guediawaye, Dakar (J.B.N. Diouf); Institut Pasteur de Côte d’Ivoire, Abidjan, Côte d’Ivoire (H. Kadjo); Institut Pasteur Paris, Paris, France (M. Bessaud)

Main Article

Figure 3

Maximum-likelihood phylogenetic tree based on the nucleotide sequences of major capsid protein gene region of enterovirus D68 from Senegal (red text) and reference sequences. Tree was constructed by using IQ-TREE2 2.0.6 (http://www.iqtree.org) and visualized by using Figtree 1.4.4 (http://tree.bio.ed.ac.uk/software/figtree). Statistical significance was tested by using 1,000 bootstrapping replicates. Software was used to define the correct model used. Tree is rooted by the Fermon strain. Scale bar indicates substitutions per site.

Figure 3. Maximum-likelihood phylogenetic tree based on the nucleotide sequences of major capsid protein gene region of enterovirus D68 from Senegal (red text) and reference sequences. Tree was constructed by using IQ-TREE2 2.0.6 (http://www.iqtree.org) and visualized by using Figtree 1.4.4 (http://tree.bio.ed.ac.uk/software/figtree). Statistical significance was tested by using 1,000 bootstrapping replicates. Software was used to define the correct model used. Tree is rooted by the Fermon strain. Scale bar indicates substitutions per site.

Main Article

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Page updated: July 21, 2024
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